Publications - Research Paper


REvolver: Modeling sequence evolution under domain constraints.

Koestler, T.; von Haeseler, A.; Ebersberger, I.;

Mol Biol Evol 2012; 29(9):2133-45


A Consistent Backbone for the Fungi.

Ebersberger, I.; de Matos Simoes, R.; Kupczok, A.; Gube, M.; Kothe, E.; Voigt, K.; von Haeseler, A.;

Mol Biol Evol 2012; 29:1319-1334.


Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda.

von Reumont, BM.; Jenner, RA.; Wills, MA.; DellAmpio, E.; Pass, G.; Ebersberger, I.; Meyer, B.; Koenemann, S.; Iliffe, TM.; Stamatakis, A.; Niehuis, O.; Meusemann, K.; Misof, B.;

Mol Biol Evol 2012; 29:1031-1045


2011 top

Phylogenomic analyses of malaria parasites and evolution of their exported proteins.

Scharf, KD.; Berberich, T.; Ebersberger, I.; Nover, L.;

BMC Evolutionary Biology. 2011; 11:167


Zygomycetes, microsporidia, and the evolutionary ancestry of sex determination.

Koestler, T.; Ebersberger, I.;

Genome Biology and Evolution. 2011; 3:186-194


2010 top

FACT: Functional annotation transfer between proteins with similar feature architecture.

Koestler, T.; von Haeseler, A.; Ebersberger, I.;

BMC Bioinformatics. 2010; 11:417


A phylogenomic approach to resolve the arthropod tree of life.

Meusemann, K.; von Reumont, BM.; Simon, S.; Roeding, F.; Strauss, S.; Kück, P.; Ebersberger, I.; Walzl, M.; Pass, G.; Breuers, S.; Achter, V.; von Haeseler, A.; Burmester, T.; Hadrys, H.; Wägele, JW.; Misof, B.;

Mol Biol Evol. 2010; 27(11):2451-2464


2009 top

Support for the monophyletic origin of Gnathifera from phylogenomics.

Witek, A.; Herlyn, H.; Ebersberger, I.; Mark Welch, DB.; Hankeln, T.;

Mol Phylogenet Evol. 2009; 53(3):1037-1041


HaMStR: profile hidden markov model based search for orthologs in ESTs.

Ebersberger, I.; Strauss, S.; von Haeseler, A.;

BMC Evol Biol. 2009; 9:157


Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection.

Cronin, SJ.; Nehme, NT.; Limmer, S.; Liegeois, S.; Pospisilik, JA.; Schramek, D.; Leibbrandt, A.; Simoes Rde, M.; Gruber, S.; Puc, U.; Ebersberger, I.; Zoranovic, T.; Neely, GG.; von Haeseler, A.; Ferrandon, D.; Penninger, JM.;

Science. 2009; 325(5938):340-343


2008 top

Centrin4 coordinates cell and nuclear division in T. brucei.

Shi, J.; Franklin, JB.; Yelinek, JT.; Ebersberger, I.; Warren, G.; He, CY;.

J Cell Sci. 2008; 121(Pt 18):3062-3070


Rooted triple consensus and anomalous gene trees.

Ewing, GB.; Ebersberger, I.; Schmidt, HA.; von Haeseler, A.;

BMC Evol Biol. 2008; 8:118


TbG63, a golgin involved in Golgi architecture in Trypanosoma brucei.

Ramirez, IB.; de Graffenried, CL.; Ebersberger, I.; Yelinek, J.; He, CY.; Price, A.; Warren, G.;

J Cell Sci. 2008; 121(Pt 9):1538-1546


2007 top

Targeted deletion of AIF decreases mitochondrial oxidative phosphorylation and protects from obesity and diabetes.

Pospisilik, JA.; Knauf, C.; Joza, N.; Benit, P.; Orthofer, M.; Cani, PD.; Ebersberger, I.; Nakashima, T.; Sarao, R.; Neely, G.; Esterbauer, H.; Kozlov, A.; Kahn, CR.; Kroemer, G.; Rustin, P.; Burcelin, R.; Penninger, JM.;

Cell. 2007; 131(3):476-491


EST sequencing of Onychophora and phylogenomic analysis of Metazoa.

Roeding, F.; Hagner-Holler, S.; Ruhberg, H.; Ebersberger, I.; von Haeseler, A.; Kube, M.; Reinhardt, R.; Burmester, T.;

Mol Phylogenet Evol. 2007; 45(3):942-951


Mapping human genetic ancestry.

Ebersberger, I.; Galgoczy, P.; Taudien, S.; Taenzer, S.; Platzer, M.; von Haeseler, A.;

Mol Biol Evol. 2007; 24(10):2266-2276


2006 top

Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae.

Krause, J.; Dear, PH.; Pollack, JL.; Slatkin, M.; Spriggs, H.; Barnes, I.; Lister, AM.; Ebersberger, I.; Pääbo, S.; Hofreiter, M.;

Nature. 2006; 439(7077):724-727


2005 top

Cracks in the shell–zooming in on eggshell formation in the human parasite Schistosoma mansoni.

Ebersberger, I.; Knobloch, J.; Kunz, W.;

Dev Genes Evol. 2005; 215(5):261-267


A genomic region evolving toward different GC contents in humans and chimpanzees indicates a recent and regionally limited shift in the mutation pattern.

Ebersberger, I.; Meyer, M.;

Mol Biol Evol. 2005; 22(5):1240-1245


2003 top

A neutral explanation for the correlation of diversity with recombination rates in humans.

Hellmann, I.; Ebersberger, I.; Ptak, SE.; Płłbo, S.; Przeworski, M.;

Am J Hum Genet. 2003 Jun;72(6):1527-1535


Selection on human genes as revealed by comparisons to chimpanzee cDNA.

Hellmann, I.; Zollner, S.; Enard, W.; Ebersberger, I.; Nickel, B.; Paabo, S.;

Genome Res. 2003; 13(5):831-837


2002 top

Genomewide comparison of DNA sequences between humans and chimpanzees.

Ebersberger, I.; Metzler, D.; Schwarz, C.; Pääbo, S.;

Am J Hum Genet. 2002; 70(6):1490-1497


1997 top

A variable intron distribution in globin genes of Chironomus: evidence for recent intron gain.

Hankeln, T.; Friedl, H.; Ebersberger, I.; Martin, J.; Schmidt, ER.;

Gene. 1997; 205(1-2):151-160

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